PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 91aa    MW: 9751.1 Da    PI: 10.7131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.6e-263280250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     ri+n   rqvtfskRr g++KKAeELS+LCda+v +++fs tgkl+ ++
  LPERR03G05670.1 32 RIDNLAARQVTFSKRRRGLFKKAEELSILCDADVGLVVFSATGKLFNFA 80
                     89*********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.4922383IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-322382IPR002100Transcription factor, MADS-box
CDDcd002651.28E-322582No hitNo description
PRINTSPR004046.7E-252545IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-242583IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002579IPR002100Transcription factor, MADS-box
PfamPF003193.9E-253279IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-254560IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-256081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAGRGGDGGG QPPQEGAAPA AAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL  60
CDADVGLVVF SATGKLFNFA NTRYTTTTCY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D3e-162582259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-162582259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-162582259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A3e-162582259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297622e-81AC229762.1 Oryza minuta clone OM__Ba0149B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985436.14e-34PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_004985437.14e-34PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_004985438.14e-34PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_004985439.14e-34PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_012698351.14e-34PREDICTED: MADS-box transcription factor 47-like isoform X2
RefseqXP_015630610.16e-34PREDICTED: MADS-box transcription factor 47 isoform X1
RefseqXP_015630611.16e-34PREDICTED: MADS-box transcription factor 47 isoform X2
SwissprotQ5K4R06e-36MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A0D9VQG76e-61A0A0D9VQG7_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011317-PA2e-33(Oryza sativa Indica Group)
STRINGLOC_Os03g08754.12e-33(Oryza sativa Japonica Group)
STRINGSi037358m1e-33(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-28AGAMOUS-like 24